If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ), 'gf_id' => 'HOM05D000832', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000832' ), 'data_identifier' => 'HOM05D000832', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000832', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '716', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p39060' => 'bna', 'A04p32300' => 'bna', 'A05p03130' => 'bna', 'A05p34490' => 'bna', 'A07p19930' => 'bna', 'A07p31800' => 'bna', 'A08p01670' => 'bna', 'A09p39680' => 'bna', 'Aa31LG10G1850' => 'aar', 'Aa31LG1G15670' => 'aar', 'Aa31LG1G24400' => 'aar', 'Aa31LG8G2140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.1973' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2041' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1213' => 'aag', 'Actinidia08756' => 'ach', 'Actinidia12572' => 'ach', 'Actinidia12573' => 'ach', 'Actinidia14835' => 'ach', 'Actinidia18799' => 'ach', 'Actinidia24364' => 'ach', 'Actinidia24365' => 'ach', 'Actinidia28451' => 'ach', 'Actinidia28452' => 'ach', 'Actinidia28453' => 'ach', 'Actinidia32218' => 'ach', 'Actinidia35213' => 'ach', 'Ah.01g003540' => 'amhyb', 'Ah.02g127340' => 'amhyb', 'Ah.03g141360' => 'amhyb', 'Ah.04g164290' => 'amhyb', 'Ah.14g080560' => 'amhyb', 'Ah.14g080570' => 'amhyb', 'AL1G39660' => 'aly', 'AL1G61740' => 'aly', 'AL2G27680' => 'aly', 'AL3G27260' => 'aly', 'AL4G41160' => 'aly', 'Aqoxy1G02063' => 'aox', 'Aqoxy1G02506' => 'aox', 'Aqoxy1G02507' => 'aox', 'Aqoxy1G02508' => 'aox', 'Aqoxy3G00432' => 'aox', 'Aqoxy3G03861' => 'aox', 'Aqoxy4G00363' => 'aox', 'Aqoxy4G00379' => 'aox', 'Aqoxy4G00709' => 'aox', 'Aqoxy6G02628' => 'aox', 'Aqoxy6G02629' => 'aox', 'Aqoxy6G02630' => 'aox', 'arahy.Tifrunner.gnm1.ann1.09V7NE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1QFN2H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.308EKY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3YC2HT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4G3XR6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7GR9X4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7TG2KL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8AJ655' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.967JHU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BV43PV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E8CC8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GCY6AL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HT9EWH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2N2VT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q0CVUM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJ2MI4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1M4EN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WRC151' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6HICW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XB7NUW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y91V86' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y9IFN0' => 'arhy', 'AT1G53310' => 'ath', 'AT1G68750' => 'ath', 'AT2G42600' => 'ath', 'AT3G14940' => 'ath', 'AT3G42628' => 'ath', 'ATR0598G239' => 'atr', 'ATR0602G034' => 'atr', 'Atru.chr11.1403' => 'acertr', 'Atru.chr2.2177' => 'acertr', 'Atru.chr6.2794' => 'acertr', 'AUR62002943' => 'cqu', 'AUR62007752' => 'cqu', 'AUR62019569' => 'cqu', 'AUR62039019' => 'cqu', 'AUR62042896' => 'cqu', 'AUR62043190' => 'cqu', 'BcaB02g10947' => 'bca', 'BcaB03g16879' => 'bca', 'BcaB04g17091' => 'bca', 'BcaB04g20955' => 'bca', 'BcaB05g24334' => 'bca', 'BcaB06g25333' => 'bca', 'BcaB06g29256' => 'bca', 'BcaB06g29519' => 'bca', 'BcaB07g33470' => 'bca', 'BcaC01g01380' => 'bca', 'BcaC01g02311' => 'bca', 'BcaC01g02321' => 'bca', 'BcaC01g03911' => 'bca', 'BcaC02g07229' => 'bca', 'BcaC02g12442' => 'bca', 'BcaC04g20792' => 'bca', 'BcaC05g26646' => 'bca', 'BcaC05g26647' => 'bca', 'BcaC06g35676' => 'bca', 'BcaC08g43157' => 'bca', 'BcaC08g44073' => 'bca', 'BcaC09g48458' => 'bca', 'BcaNung03226' => 'bca', 'BcaNung06368' => 'bca', 'BolC1t04909H' => 'bol', 'BolC3t17004H' => 'bol', 'BolC3t18942H' => 'bol', 'BolC3t21461H' => 'bol', 'BolC4t22010H' => 'bol', 'BolC4t28482H' => 'bol', 'BolC5t31213H' => 'bol', 'BolC5t33910H' => 'bol', 'BolC6t35571H' => 'bol', 'BolC6t36651H' => 'bol', 'BolC6t38836H' => 'bol', 'BolC7t41681H' => 'bol', 'BolC9t56794H' => 'bol', 'BraA01t03939Z' => 'bra', 'BraA03t13055Z' => 'bra', 'BraA04t18684Z' => 'bra', 'BraA05t19303Z' => 'bra', 'BraA05t22269Z' => 'bra', 'BraA07t30807Z' => 'bra', 'BraA08t32220Z' => 'bra', 'BraA09t39467Z' => 'bra', 'BraA09t40979Z' => 'bra', 'C01p49520' => 'bna', 'C01p49530' => 'bna', 'C01p49540' => 'bna', 'C03p47330' => 'bna', 'C03p66650' => 'bna', 'C03p66740' => 'bna', 'C03p91410' => 'bna', 'C04p03760' => 'bna', 'C04p69820' => 'bna', 'C05p24840' => 'bna', 'C05p52230' => 'bna', 'C06p04400' => 'bna', 'C06p14690' => 'bna', 'C06p37340' => 'bna', 'C07p12130' => 'bna', 'C09p39150' => 'bna', 'C09p39160' => 'bna', 'CAN.G1119.5' => 'can', 'CAN.G162.7' => 'can', 'CAN.G329.2' => 'can', 'CAN.G355.4' => 'can', 'CAN.G44.11' => 'can', 'CAN.G456.1' => 'can', 'CANSAT35G0934' => 'cansat', 'CANSAT64G1343' => 'cansat', 'CARHR025810' => 'chi', 'CARHR043540' => 'chi', 'CARHR061570' => 'chi', 'CARHR089880' => 'chi', 'CARHR137740' => 'chi', 'Carub.0001s2485' => 'cru', 'Carub.0001s4249' => 'cru', 'Carub.0002s1530' => 'cru', 'Carub.0003s1460' => 'cru', 'Carub.0004s2505' => 'cru', 'Ca_01453_v3' => 'car', 'Ca_03989_v3' => 'car', 'Ca_05096_v3' => 'car', 'Ca_10524_v3' => 'car', 'Ca_18112_v3' => 'car', 'Ca_27404_v3' => 'car', 'Ca_27906_v3' => 'car', 'Ca_28238_v3' => 'car', 'Ca_29417_v3' => 'car', 'Ca_30206_v3' => 'car', 'CBR_g15996' => 'cbr', 'CBR_g38936' => 'cbr', 'CBR_g51453' => 'cbr', 'CBR_g8799' => 'cbr', 'CBR_g8801' => 'cbr', 'CBR_g8806' => 'cbr', 'Cc05_g08360' => 'ccan', 'Cc05_g11180' => 'ccan', 'Cc05_g12480' => 'ccan', 'Cc10_g07990' => 'ccan', 'Cc11_g10810' => 'ccan', 'CDE02G3564' => 'cde', 'CDE07G1750' => 'cde', 'CDE09G0182' => 'cde', 'CDE10G0312' => 'cde', 'CDE10G0490' => 'cde', 'CDE10G0606' => 'cde', 'Cfa008782' => 'cfa', 'Cfa019572' => 'cfa', 'Cfa023333' => 'cfa', 'Ciclev10014164m.g' => 'ccl', 'Ciclev10018719m.g' => 'ccl', 'Ciclev10030580m.g' => 'ccl', 'CiPaw.02G070400' => 'cil', 'CiPaw.03G187900' => 'cil', 'CiPaw.05G116300' => 'cil', 'CiPaw.06G099100' => 'cil', 'CiPaw.11G160800' => 'cil', 'CiPaw.12G113900' => 'cil', 'ClCG01G005810' => 'cla', 'ClCG07G002780' => 'cla', 'ClCG11G017490' => 'cla', 'COL.COLO4_07850' => 'col', 'COL.COLO4_17567' => 'col', 'COL.COLO4_28713' => 'col', 'COL.COLO4_33581' => 'col', 'Cpa.g.sc1.236' => 'cpa', 'Cpa.g.sc1.237' => 'cpa', 'Cpa.g.sc52.175' => 'cpa', 'Cpa.g.sc97.104' => 'cpa', 'Cre03.g171950' => 'cre', 'Cre11.g476325' => 'cre', 'Cre16.g673852' => 'cre', 'CsaV3_4G033150' => 'csa', 'CsaV3_5G028880' => 'csa', 'CsaV3_7G005670' => 'csa', 'CSS0000407' => 'camsi', 'CSS0003578' => 'camsi', 'CSS0004165' => 'camsi', 'CSS0018591' => 'camsi', 'CSS0020356' => 'camsi', 'CSS0027131' => 'camsi', 'CSS0028168' => 'camsi', 'CSS0028472' => 'camsi', 'CSS0036334' => 'camsi', 'CSS0040933' => 'camsi', 'CSS0043479' => 'camsi', 'CSS0044315' => 'camsi', 'CSS0044860' => 'camsi', 'CSS0045418' => 'camsi', 'CSS0048494' => 'camsi', 'DCAR_013153' => 'dca', 'DCAR_019596' => 'dca', 'DCAR_021022' => 'dca', 'DCAR_021291' => 'dca', 'DCAR_030097' => 'dca', 'Dinv05809' => 'din', 'Dinv08799' => 'din', 'Dinv14989' => 'din', 'Dinv15442' => 'din', 'Dinv16529' => 'din', 'Dinv18360' => 'din', 'Dinv18702' => 'din', 'Duzib147G0510' => 'dzi', 'Duzib187G0481' => 'dzi', 'Duzib187G1110' => 'dzi', 'Duzib213G0309' => 'dzi', 'Duzib248G1658' => 'dzi', 'ECA233G3801' => 'eca', 'ECA234G1176' => 'eca', 'ECA234G2274' => 'eca', 'ECA236G4799' => 'eca', 'ECA240G4584' => 'eca', 'EL10Ac4g08333' => 'bvu', 'EL10Ac6g14528' => 'bvu', 'EL10Ac9g20939' => 'bvu', 'EL10As6g23692' => 'bvu', 'Eucgr.A01915' => 'egr', 'Eucgr.B03067' => 'egr', 'Eucgr.F01229' => 'egr', 'FAN02G1280' => 'fan', 'FAN02G3824' => 'fan', 'FAN02G3935' => 'fan', 'FAN02G4171' => 'fan', 'FAN02G4272' => 'fan', 'FAN05G2136' => 'fan', 'FAN05G3999' => 'fan', 'FAN07G1155' => 'fan', 'FAN09G0214' => 'fan', 'FAN09G1225' => 'fan', 'FAN09G4463' => 'fan', 'FAN09G4870' => 'fan', 'FAN11G3792' => 'fan', 'FAN12G1340' => 'fan', 'FAN14G2279' => 'fan', 'FAN16G0082' => 'fan', 'FAN17G1376' => 'fan', 'FAN20G0721' => 'fan', 'FAN21G2640' => 'fan', 'FAN22G0367' => 'fan', 'FAN24G1031' => 'fan', 'FAN25G0289' => 'fan', 'FAN27G2334' => 'fan', 'FvH4_2g28670' => 'fve', 'FvH4_3g18430' => 'fve', 'FvH4_4g28350' => 'fve', 'FvH4_6g27390' => 'fve', 'FvH4_6g33320' => 'fve', 'Glyma.01G091000' => 'gma', 'Glyma.02G117816' => 'gma', 'Glyma.02G118116' => 'gma', 'Glyma.02G118132' => 'gma', 'Glyma.02G118148' => 'gma', 'Glyma.02G118164' => 'gma', 'Glyma.02G118180' => 'gma', 'Glyma.02G118196' => 'gma', 'Glyma.02G118228' => 'gma', 'Glyma.02G118244' => 'gma', 'Glyma.02G118260' => 'gma', 'Glyma.02G130701' => 'gma', 'Glyma.02G130816' => 'gma', 'Glyma.02G130832' => 'gma', 'Glyma.02G130848' => 'gma', 'Glyma.02G130880' => 'gma', 'Glyma.02G130896' => 'gma', 'Glyma.06G229900' => 'gma', 'Glyma.06G277500' => 'gma', 'Glyma.10G205500' => 'gma', 'Glyma.12G161300' => 'gma', 'Glyma.12G210600' => 'gma', 'Glyma.12G229400' => 'gma', 'Glyma.13G270400' => 'gma', 'Glyma.13G290700' => 'gma', 'Gohir.A01G055800' => 'ghi', 'Gohir.A02G071902' => 'ghi', 'Gohir.A02G138500' => 'ghi', 'Gohir.A08G234600' => 'ghi', 'Gohir.A09G001400' => 'ghi', 'Gohir.A12G086300' => 'ghi', 'Gohir.A12G172900' => 'ghi', 'Gohir.A13G149100' => 'ghi', 'Gohir.D01G042766' => 'ghi', 'Gohir.D08G255000' => 'ghi', 'Gohir.D09G001100' => 'ghi', 'Gohir.D12G084900' => 'ghi', 'Gohir.D12G175500' => 'ghi', 'Gohir.D13G153600' => 'ghi', 'Gorai.002G061400' => 'gra', 'Gorai.004G272100' => 'gra', 'Gorai.006G001300' => 'gra', 'Gorai.008G095300' => 'gra', 'Gorai.008G187900' => 'gra', 'Gorai.013G173500' => 'gra', 'GSVIVG01011979001' => 'vvi', 'GSVIVG01014206001' => 'vvi', 'GSVIVG01014670001' => 'vvi', 'GSVIVG01020705001' => 'vvi', 'HanXRQChr03g0079131' => 'han', 'HanXRQChr05g0145101' => 'han', 'HanXRQChr06g0182061' => 'han', 'HanXRQChr07g0190711' => 'han', 'HanXRQChr08g0214471' => 'han', 'HanXRQChr10g0304891' => 'han', 'HanXRQChr13g0388931' => 'han', 'HanXRQChr14g0442731' => 'han', 'HanXRQChr15g0495261' => 'han', 'HanXRQChr17g0560501' => 'han', 'HanXRQChr17g0560511' => 'han', 'HanXRQChr17g0568111' => 'han', 'Haze_09334' => 'cav', 'Haze_11794' => 'cav', 'Haze_13373' => 'cav', 'Hma1.2p1_0111F.1_g053130' => 'hma', 'Hma1.2p1_0178F.1_g078810' => 'hma', 'Hma1.2p1_0406F.1_g145940' => 'hma', 'Hma1.2p1_1016F.1_g248120' => 'hma', 'Hma1.2p1_1016F.1_g248130' => 'hma', 'HPP92_008219' => 'vpl', 'HPP92_011592' => 'vpl', 'HPP92_024758' => 'vpl', 'Hund00894' => 'sun', 'Hund00896' => 'sun', 'Hund00897' => 'sun', 'Hund00899' => 'sun', 'Hund00901' => 'sun', 'Hund00902' => 'sun', 'Hund00903' => 'sun', 'Hund00904' => 'sun', 'Hund05778' => 'sun', 'Hund07811' => 'sun', 'Hund10499' => 'sun', 'Hund23522' => 'sun', 'Hund23523' => 'sun', 'Hund23524' => 'sun', 'Lalb_Chr01g0006821' => 'lal', 'Lalb_Chr02g0151871' => 'lal', 'Lalb_Chr03g0029911' => 'lal', 'Lalb_Chr03g0029921' => 'lal', 'Lalb_Chr03g0031131' => 'lal', 'Lalb_Chr14g0367491' => 'lal', 'Lalb_Chr19g0133831' => 'lal', 'Lalb_Chr20g0109301' => 'lal', 'Lalb_Chr22g0356901' => 'lal', 'Lalb_Chr25g0285901' => 'lal', 'Lj1A681G35' => 'lonja', 'Lj1A831T66' => 'lonja', 'Lj2g0012347' => 'lja', 'Lj3A1022G56' => 'lonja', 'Lj3g0005076' => 'lja', 'Lj3g0026975' => 'lja', 'Lj3g0027322' => 'lja', 'Lj5g0020451' => 'lja', 'Lj6A768T59' => 'lonja', 'Lj8C149T4' => 'lonja', 'Lju1655C0G2' => 'lonja', 'Lsat_1_v5_gn_3_78841' => 'lsa', 'Lsat_1_v5_gn_7_103521' => 'lsa', 'Lsat_1_v5_gn_8_141241' => 'lsa', 'Lsat_1_v5_gn_8_38141' => 'lsa', 'Lsat_1_v5_gn_9_100240' => 'lsa', 'Manes.02G091300' => 'mes', 'Manes.03G101900' => 'mes', 'Manes.06G074600' => 'mes', 'Manes.14G095900' => 'mes', 'Manes.15G093700' => 'mes', 'Mapoly0014s0093' => 'mpo', 'Mapoly0030s0078' => 'mpo', 'Mapoly0033s0016' => 'mpo', 'MBI06_g17899_MAGBIO' => 'mbi', 'MBI06_g26014_MAGBIO' => 'mbi', 'MBI06_g35120_MAGBIO' => 'mbi', 'MBI07_g03185_MAGBIO' => 'mbi', 'MBI10_g18304_MAGBIO' => 'mbi', 'MBI16_g06572_MAGBIO' => 'mbi', 'MCO11G460' => 'mco', 'MD03G1242000' => 'mdo', 'MD05G1227100' => 'mdo', 'MD09G1237900' => 'mdo', 'MD11G1261900' => 'mdo', 'MD13G1049200' => 'mdo', 'MD16G1050300' => 'mdo', 'MD17G1230800' => 'mdo', 'Medtr0002s0890' => 'mtr', 'Medtr1g009850' => 'mtr', 'Medtr1g094000' => 'mtr', 'Medtr1g094010' => 'mtr', 'Medtr2g076670' => 'mtr', 'Medtr2g092930' => 'mtr', 'Medtr4g079860' => 'mtr', 'Medtr7g060030' => 'mtr', 'Medtr8g463920' => 'mtr', 'MELO3C005348.2' => 'cme', 'MELO3C018724.2' => 'cme', 'MELO3C025636.2' => 'cme', 'Migut.E00286' => 'egut', 'Migut.H01993' => 'egut', 'Migut.M00260' => 'egut', 'Migut.M00734' => 'egut', 'MSTRG.14959' => 'ama', 'MSTRG.15091' => 'ama', 'MSTRG.2271' => 'ama', 'Nitab4.5_0000035g0130' => 'nta', 'Nitab4.5_0000221g0050' => 'nta', 'Nitab4.5_0000246g0220' => 'nta', 'Nitab4.5_0000383g0180' => 'nta', 'Nitab4.5_0001095g0080' => 'nta', 'Nitab4.5_0001145g0030' => 'nta', 'Nitab4.5_0002252g0040' => 'nta', 'Nitab4.5_0003669g0010' => 'nta', 'Nitab4.5_0004675g0020' => 'nta', 'Nitab4.5_0009754g0020' => 'nta', 'Nn1g04414' => 'nnu', 'Nn1g09128' => 'nnu', 'Nn2g14461' => 'nnu', 'Nn3g17670' => 'nnu', 'Nn4g23672' => 'nnu', 'Oeu018750.1' => 'oeu', 'Oeu018751.1' => 'oeu', 'Oeu018976.1' => 'oeu', 'Oeu020919.1' => 'oeu', 'Oeu024113.1' => 'oeu', 'Oeu025334.1' => 'oeu', 'Oeu059262.1' => 'oeu', 'Oeu061355.1' => 'oeu', 'Os01g0110700' => 'osa', 'Os01g0208700' => 'osa', 'Os01g0746000' => 'osa', 'Os01g0758300' => 'osa', 'Os02g0244700' => 'osa', 'Os08g0366000' => 'osa', 'Os09g0315700' => 'osa', 'Peaxi162Scf00027g00016' => 'pax', 'Peaxi162Scf00069g02244' => 'pax', 'Peaxi162Scf00122g01723' => 'pax', 'Peaxi162Scf00369g00124' => 'pax', 'Peaxi162Scf00469g00026' => 'pax', 'Peaxi162Scf00614g00038' => 'pax', 'PGR042G1618' => 'pgr', 'PGR083G2103' => 'pgr', 'PGR102G0673' => 'pgr', 'PGSC0003DMG400007466' => 'stu', 'PGSC0003DMG400012387' => 'stu', 'PGSC0003DMG400015385' => 'stu', 'PGSC0003DMG400020422' => 'stu', 'PGSC0003DMG400021264' => 'stu', 'Phvul.003G024800' => 'pvu', 'Phvul.005G066400' => 'pvu', 'Phvul.005G095300' => 'pvu', 'Phvul.007G101300' => 'pvu', 'Phvul.011G130400' => 'pvu', 'Phvul.011G160200' => 'pvu', 'Potri.001G391900' => 'ptr', 'Potri.002G214100' => 'ptr', 'Potri.008G114200' => 'ptr', 'Potri.010G131800' => 'ptr', 'Potri.011G110700' => 'ptr', 'Pp3c12_10250' => 'ppa', 'Pp3c15_4920' => 'ppa', 'Pp3c16_6580' => 'ppa', 'Pp3c1_19290' => 'ppa', 'Pp3c3_11630' => 'ppa', 'Pp3c5_14630' => 'ppa', 'Pp3c6_12940' => 'ppa', 'Pp3c9_11080' => 'ppa', 'PRCOL_00000396' => 'pco', 'Prupe.1G302700' => 'ppe', 'Prupe.3G118300' => 'ppe', 'Prupe.3G118400' => 'ppe', 'Prupe.4G166400' => 'ppe', 'Psat0s1185g0040' => 'psa', 'Psat0s14109g0040' => 'psa', 'Psat0s2975g0040' => 'psa', 'Psat0s2975g0080' => 'psa', 'Psat0s2975g0120' => 'psa', 'Psat0s2975g0200' => 'psa', 'Psat0s3955g0040' => 'psa', 'Psat1g130520' => 'psa', 'Psat2g088840' => 'psa', 'Psat3g007440' => 'psa', 'Psat3g142240' => 'psa', 'Psat3g193920' => 'psa', 'Psat4g136600' => 'psa', 'Psat4g155760' => 'psa', 'Psat5g031640' => 'psa', 'Psat5g238360' => 'psa', 'Psat5g258480' => 'psa', 'Psat5g275840' => 'psa', 'Psat6g181480' => 'psa', 'Psat6g187920' => 'psa', 'Psat6g219240' => 'psa', 'Psat7g001160' => 'psa', 'Psat7g057440' => 'psa', 'Psat7g165320' => 'psa', 'Psat7g215800' => 'psa', 'PSO063G0726' => 'pso', 'PSO210G5927' => 'pso', 'PSO229G0152' => 'pso', 'PSO478G2608' => 'pso', 'PSO675G8649' => 'pso', 'PSO782G2553' => 'pso', 'QL03p045000' => 'qlo', 'QL08p026473' => 'qlo', 'QL08p041707' => 'qlo', 'RcHm_v2.0_Chr1g0330331' => 'rch', 'RcHm_v2.0_Chr1g0330341' => 'rch', 'RcHm_v2.0_Chr1g0336151' => 'rch', 'RcHm_v2.0_Chr1g0341171' => 'rch', 'RcHm_v2.0_Chr1g0355571' => 'rch', 'RcHm_v2.0_Chr1g0355581' => 'rch', 'RcHm_v2.0_Chr1g0379911' => 'rch', 'RcHm_v2.0_Chr1g0379921' => 'rch', 'RcHm_v2.0_Chr2g0090101' => 'rch', 'RcHm_v2.0_Chr2g0118311' => 'rch', 'RcHm_v2.0_Chr2g0129661' => 'rch', 'RcHm_v2.0_Chr2g0135881' => 'rch', 'RcHm_v2.0_Chr2g0135891' => 'rch', 'RcHm_v2.0_Chr2g0155351' => 'rch', 'RcHm_v2.0_Chr2g0155361' => 'rch', 'RcHm_v2.0_Chr2g0155371' => 'rch', 'RcHm_v2.0_Chr4g0394861' => 'rch', 'RcHm_v2.0_Chr4g0407121' => 'rch', 'RcHm_v2.0_Chr4g0407141' => 'rch', 'RcHm_v2.0_Chr4g0436201' => 'rch', 'RcHm_v2.0_Chr5g0016171' => 'rch', 'RcHm_v2.0_Chr5g0016231' => 'rch', 'RcHm_v2.0_Chr5g0031161' => 'rch', 'RcHm_v2.0_Chr5g0035481' => 'rch', 'RcHm_v2.0_Chr5g0035491' => 'rch', 'RcHm_v2.0_Chr5g0035501' => 'rch', 'RcHm_v2.0_Chr5g0035591' => 'rch', 'RcHm_v2.0_Chr5g0035601' => 'rch', 'RcHm_v2.0_Chr5g0035671' => 'rch', 'RcHm_v2.0_Chr5g0035681' => 'rch', 'RcHm_v2.0_Chr5g0035831' => 'rch', 'RcHm_v2.0_Chr5g0035841' => 'rch', 'RcHm_v2.0_Chr5g0035851' => 'rch', 'RcHm_v2.0_Chr5g0035861' => 'rch', 'RcHm_v2.0_Chr5g0063691' => 'rch', 'RcHm_v2.0_Chr5g0063711' => 'rch', 'RcHm_v2.0_Chr5g0075311' => 'rch', 'RcHm_v2.0_Chr6g0248021' => 'rch', 'RcHm_v2.0_Chr6g0312321' => 'rch', 'RcHm_v2.0_Chr6g0312331' => 'rch', 'RcHm_v2.0_Chr7g0200221' => 'rch', 'Rhsim04G0026100' => 'rsi', 'Rhsim04G0074500' => 'rsi', 'Rhsim06G0207400' => 'rsi', 'Rhsim09G0114100' => 'rsi', 'Sabra08G0086500' => 'sbr', 'Sabra10G0100500' => 'sbr', 'Sabra11G0098200' => 'sbr', 'Sabra14G0107400' => 'sbr', 'Sabra14G0107500' => 'sbr', 'Sabra16G0256900' => 'sbr', 'SalBow7G0668' => 'sbo', 'SalBow7G1446' => 'sbo', 'SalBow8G0667' => 'sbo', 'SalBow8G0835' => 'sbo', 'SalBow8G2675' => 'sbo', 'SalBow8G2977' => 'sbo', 'SalBow8G5204' => 'sbo', 'Sc03g0010500' => 'sci', 'Sc04g0006860' => 'sci', 'Sc06g0009070' => 'sci', 'Sc16g0007520' => 'sci', 'Sed0007358' => 'sed', 'Sed0023826' => 'sed', 'Sed0024627' => 'sed', 'Sed0025115' => 'sed', 'Sed0027764' => 'sed', 'SEGI_03447' => 'sgi', 'SEGI_07166' => 'sgi', 'SEGI_07779' => 'sgi', 'SEGI_08225' => 'sgi', 'SEGI_08791' => 'sgi', 'SEGI_10409' => 'sgi', 'SEGI_16832' => 'sgi', 'SEGI_17939' => 'sgi', 'SGA_v2.0_scaffold130G34294' => 'sas', 'SGA_v2.0_scaffold14G06799' => 'sas', 'SGA_v2.0_scaffold47G17800' => 'sas', 'SHI24310' => 'shi', 'SMO146G0010' => 'smo', 'SMO201G0063' => 'smo', 'SMO239G0149' => 'smo', 'SMO351G0001' => 'smo', 'SMO365G0053' => 'smo', 'Solyc04g006970.4' => 'sly', 'Solyc07g055060.3' => 'sly', 'Solyc07g062530.3' => 'sly', 'Solyc09g015490.3' => 'sly', 'Solyc10g007290.4' => 'sly', 'Solyc12g014250.2' => 'sly', 'Sopen01g024180' => 'spe', 'Sopen04g002020' => 'spe', 'Sopen07g027150' => 'spe', 'Sopen07g030760' => 'spe', 'Sopen10g003110' => 'spe', 'Sopen12g006040' => 'spe', 'Sp1g22570' => 'spa', 'Sp1g39890' => 'spa', 'Sp3g13150' => 'spa', 'Sp4g24740' => 'spa', 'Sp5g23860' => 'spa', 'SpUn0002_0090' => 'spa', 'TAR371G0210' => 'tar', 'TAR622G0475' => 'tar', 'TAR624G0714' => 'tar', 'TAR626G0507' => 'tar', 'TAR627G1130' => 'tar', 'TAR702G0001' => 'tar', 'THA.LOC104802255' => 'tha', 'THA.LOC104804737' => 'tha', 'THA.LOC104808410' => 'tha', 'THA.LOC104815570' => 'tha', 'THA.LOC104822563' => 'tha', 'THA.LOC104823477' => 'tha', 'Thecc.01G150600' => 'tca', 'Thecc.02G363600' => 'tca', 'Thecc.07G110100' => 'tca', 'Thhalv10006672m.g' => 'esa', 'Thhalv10011967m.g' => 'esa', 'Thhalv10016192m.g' => 'esa', 'Thhalv10018058m.g' => 'esa', 'Thhalv10019997m.g' => 'esa', 'TPR.G10788' => 'tpr', 'TPR.G11496' => 'tpr', 'TPR.G19367' => 'tpr', 'TPR.G2687' => 'tpr', 'TPR.G27416' => 'tpr', 'TPR.G28308' => 'tpr', 'TPR.G28311' => 'tpr', 'TPR.G39957' => 'tpr', 'TPR.G7686' => 'tpr', 'TPR.G9800' => 'tpr', 'TWI31G0281' => 'twi', 'TWI38G1567' => 'twi', 'TWI38G1966' => 'twi', 'TWI59G0451' => 'twi', 'unitig_27.g25233' => 'ugi', 'unitig_27.g25234' => 'ugi', 'unitig_27.g25235' => 'ugi', 'unitig_62.g23143' => 'ugi', 'unitig_746.g26831' => 'ugi', 'unitig_85.g27371' => 'ugi', 'unitig_85.g27372' => 'ugi', 'vmacro09216' => 'vma', 'vmacro09496' => 'vma', 'vmacro10512' => 'vma', 'vmacro11933' => 'vma', 'vmacro23402' => 'vma', 'VMungo0464G0422' => 'vmu', 'VMungo0720G2531' => 'vmu', 'VMungo1080G0070' => 'vmu', 'VMungo1080G1036' => 'vmu', 'VMungo1127G1249' => 'vmu', 'VMungo1127G1645' => 'vmu', 'VMungo1215G1721' => 'vmu', 'Zm00001eb126420' => 'zma', 'Zm00001eb204600' => 'zma', 'Zm00001eb238670' => 'zma', 'Zm00001eb309660' => 'zma', 'Zm00001eb346640' => 'zma', 'Zm00001eb370590' => 'zma', 'Zm00001eb383680' => 'zma', 'Zm00001eb419330' => 'zma', 'Zm00001eb428710' => 'zma' ) $gf_id = 'HOM05D000832' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000832' ) $data_identifier = 'HOM05D000832' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 6, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 22, 'ath' => (int) 5, 'atr' => (int) 2, 'acertr' => (int) 3, 'cqu' => (int) 6, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 9, 'can' => (int) 6, 'cansat' => (int) 2, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 10, 'cbr' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 6, 'cfa' => (int) 3, 'ccl' => (int) 3, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 15, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 5, 'eca' => (int) 5, 'bvu' => (int) 4, 'egr' => (int) 3, 'fan' => (int) 23, 'fve' => (int) 5, 'gma' => (int) 25, 'ghi' => (int) 14, 'gra' => (int) 6, 'vvi' => (int) 4, 'han' => (int) 12, 'cav' => (int) 3, 'hma' => (int) 5, 'vpl' => (int) 3, 'sun' => (int) 14, 'lal' => (int) 10, 'lonja' => (int) 6, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 5, 'mpo' => (int) 3, 'mbi' => (int) 6, 'mco' => (int) 1, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 3, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 10, 'nnu' => (int) 5, 'oeu' => (int) 8, 'osa' => (int) 7, 'pax' => (int) 6, 'pgr' => (int) 3, 'stu' => (int) 5, 'pvu' => (int) 6, 'ptr' => (int) 5, 'ppa' => (int) 8, 'pco' => (int) 1, 'ppe' => (int) 4, 'psa' => (int) 25, 'pso' => (int) 6, 'qlo' => (int) 3, 'rch' => (int) 41, 'rsi' => (int) 4, 'sbr' => (int) 6, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 8, 'sas' => (int) 3, 'shi' => (int) 1, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 6, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 5, 'tpr' => (int) 10, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb428710' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1